TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

hvu-miR1120

Organism

Hordeum vulgare

Species

Mature miRNA Sequence(5'-3')

ACAUUCUUAUAUUAUGGGACGGAG

miRBase

Precursor miRNA Sequence(5'-3')

CUACUCCCUCCUUCCCAUAUAUAAGAGUGUUUUUAAUACUACACUAGUGUGAAAAACAUUCUUAUAUUAUGGGACGGAGGAGUU

miRBase

Precursor miRNA Structure(5'-3') 

CU     C   U       -               A        
  ACUCC UCC UCCCAUA UAUAAGAGUGUUUUU AUACUAC 
  ||||| ||| ||||||| ||||||||||||||| |||||| A
  UGAGG AGG AGGGUAU AUAUUCUUACAAAAA UGUGAUA 
-U     -   C       U               G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1120a         ACAUUCUUAUAUUAUGAGACGGAG-
hvu-miR1120          ACAUUCUUAUAUUAUGGGACGGAG-
tae-miR1120b-3p      ---UUCUUAUAUUGUGGGACAGAG-
tae-miR1130b-3p      ----UCUUAUAUUAUGGGACGGAGG
tae-miR1122c-3p      ----UCUAAUAUUAUGGGACGGAGG
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