TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR1120a

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

ACAUUCUUAUAUUAUGAGACGGAG

miRBase

Precursor miRNA Sequence(5'-3')

GCGGCCGCCCGGGCAGGUACUCCCUCCGUCCCAUAAUAUAAGAACAUUUUUGACAGUGUAGUGUCAAAAACAUUCUUAUAUUAUGAGACGGAGGGAGUAUUUCCCAGCUCCUGAAUCAC

miRBase

Precursor miRNA Structure(5'-3') 

-----G   CC  CC   C                C             CA         GU 
      CGG  GC  GGG AGGUACUCCCUCCGUC CAUAAUAUAAGAA  UUUUUGACA  G
      |||  ||  ||| |||||||||||||||| |||||||||||||  |||||||||   
      GUC  CG  CCC UUUAUGAGGGAGGCAG GUAUUAUAUUCUU  AAAAACUGU  G
CACUAA   CU  -A   -                A             AC         GA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1120a         ACAUUCUUAUAUUAUGAGACGGAG-
hvu-miR1120          ACAUUCUUAUAUUAUGGGACGGAG-
tae-miR1120b-3p      ---UUCUUAUAUUGUGGGACAGAG-
tae-miR1130b-3p      ----UCUUAUAUUAUGGGACGGAGG
tae-miR1122c-3p      ----UCUAAUAUUAUGGGACGGAGG
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