TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR1122c-3p

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

UCUAAUAUUAUGGGACGGAGG

miRBase

Precursor miRNA Sequence(5'-3')

GUGAACUACUCUCUCCAUCCCAUAAUGUAAGACGUUUUUGCAAACUAUAUUAGCUUGCAAAAACGUCUAAUAUUAUGGGACGGAGGGAGUAGUACA

miRBase

Precursor miRNA Structure(5'-3') 

G  A            A           A              A     
 UG ACUACUCUCUCC UCCCAUAAUGU AGACGUUUUUGCAA CUAU 
 || |||||||||||| ||||||||||| |||||||||||||| ||| A
 AC UGAUGAGGGAGG AGGGUAUUAUA UCUGCAAAAACGUU GAUA 
-  A            C           A              C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1120a         ACAUUCUUAUAUUAUGAGACGGAG-
hvu-miR1120          ACAUUCUUAUAUUAUGGGACGGAG-
tae-miR1120b-3p      ---UUCUUAUAUUGUGGGACAGAG-
tae-miR1130b-3p      ----UCUUAUAUUAUGGGACGGAGG
tae-miR1122c-3p      ----UCUAAUAUUAUGGGACGGAGG
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