TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR1120b-3p

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

UUCUUAUAUUGUGGGACAGAG

miRBase

Precursor miRNA Sequence(5'-3')

UAAAUACUCCCUCUGUCCCAAAAUAUAAGAACAUUUUUGACACUAUUGUAAUGUUAAAAAUGUUCUUAUAUUGUGGGACAGAGGGAGUAGUUU

miRBase

Precursor miRNA Structure(5'-3') 

UAAA                A                     CUA 
    UACUCCCUCUGUCCCA AAUAUAAGAACAUUUUUGACA   U
    |||||||||||||||| |||||||||||||||||||||   U
    AUGAGGGAGACAGGGU UUAUAUUCUUGUAAAAAUUGU   A
UUUG                G                     AAU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1120a         ACAUUCUUAUAUUAUGAGACGGAG-
hvu-miR1120          ACAUUCUUAUAUUAUGGGACGGAG-
tae-miR1120b-3p      ---UUCUUAUAUUGUGGGACAGAG-
tae-miR1130b-3p      ----UCUUAUAUUAUGGGACGGAGG
tae-miR1122c-3p      ----UCUAAUAUUAUGGGACGGAGG
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