TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sbi-miR529

Organism

Sorghum bicolor

Species

Mature miRNA Sequence(5'-3')

CUGUACCCUCUCUCUUCUUC

miRBase

Precursor miRNA Sequence(5'-3')

GGGAGAAGAGAGAGAGUACAGCCUUACCAUGUACACACACUCCAAUCUCAACAGUCUCUUAUAUAUGCUGCUGUUACCUGUGAGUGUGAUGAAGGCUGUACCCUCUCUCUUCUUCU

miRBase

Precursor miRNA Structure(5'-3') 

              A          AC   GUACA       -  AUCUC      CU UUA 
GGGAGAAGAGAGAG GUACAGCCUU  CAU     CACACUC CA     AACAGU  C   U
|||||||||||||| ||||||||||  |||     ||||||| ||     ||||||  |    
UCUUCUUCUCUCUC CAUGUCGGAA  GUA     GUGUGAG GU     UUGUCG  G   A
              C          --   -----       U  --CCA      UC UAU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR529-3p      GCUGUACCCUCUCUCUUCUUC
osa-miR529a        -CUGUACCCUCUCUCUUCUUC
bdi-miR529-3p      GCUGUACCCUCUCUCUUCUUC
sbi-miR529         -CUGUACCCUCUCUCUUCUUC
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