TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR529-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GCUGUACCCUCUCUCUUCUUC

miRBase

Precursor miRNA Sequence(5'-3')

GAGAAGAGAGAGAGUACAGCCUUGUUGCCAUGUACACACUCAGAUAUCAACAGUCUCUUAUAUUUGCUGUUACUACCUGUUAUUAGUGUCCAGUGAUGAUGAAGGCUGUACCCUCUCUCUUCUUCU

miRBase

Precursor miRNA Structure(5'-3') 

--            A          -    C   GUAC     -----   A  UC      CUCU 
  GAGAAGAGAGAG GUACAGCCUU GUUG CAU    ACACU     CAG UA  AACAGU    U
  |||||||||||| |||||||||| |||| |||    |||||     ||| ||  ||||||    A
  UUCUUCUCUCUC CAUGUCGGAA UAGU GUG    UGUGA     GUC AU  UUGUCG    U
UC            C          G    A   -ACC     UUAUU   C  CA      UUUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR529-3p      GCUGUACCCUCUCUCUUCUUC
osa-miR529a        -CUGUACCCUCUCUCUUCUUC
bdi-miR529-3p      GCUGUACCCUCUCUCUUCUUC
sbi-miR529         -CUGUACCCUCUCUCUUCUUC
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