TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR529-3p

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

GCUGUACCCUCUCUCUUCUUC

miRBase

Precursor miRNA Sequence(5'-3')

CGUCAAGGUUAAAGGGAGAAGAGAGAGAGUACAGCCUUAAUUAAGCUCGAUCGAUCUGUCUUGUAUCAAGGCUGUACCCUCUCUCUUCUUCUCUUAGCUUCUUGAUG

miRBase

Precursor miRNA Structure(5'-3') 

       --     A              A          A  -    - UCGA 
CGUCAAG  GUUAA GGGAGAAGAGAGAG GUACAGCCUU AU UAAG C    U
|||||||  ||||| |||||||||||||| |||||||||| || |||| |    C
GUAGUUC  CGAUU UCUUCUUCUCUCUC CAUGUCGGAA UA GUUC G    U
       UU     C              C          C  U    U UCUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR529-3p      GCUGUACCCUCUCUCUUCUUC
osa-miR529a        -CUGUACCCUCUCUCUUCUUC
bdi-miR529-3p      GCUGUACCCUCUCUCUUCUUC
sbi-miR529         -CUGUACCCUCUCUCUUCUUC
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