TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR529a

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

CUGUACCCUCUCUCUUCUUC

miRBase

Precursor miRNA Sequence(5'-3')

GAAGAAGAGAGAGAGUACAGCCUUAGUUCAGAUCACAUAUGACUAUCUUUUGCGAGUCUGAUCGAUACUCUGAUGAAGGCUGUACCCUCUCUCUUCUUC

miRBase

Precursor miRNA Structure(5'-3') 

             A          AGU     ---  AC  AU    AU U 
GAAGAAGAGAGAG GUACAGCCUU   UCAGA   UC  AU  GACU  C U
||||||||||||| ||||||||||   |||||   ||  ||  ||||  |  
CUUCUUCUCUCUC CAUGUCGGAA   AGUCU   AG  UA  CUGA  G G
             C          -GU     CAU  -C  GU    GC U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR529-3p      GCUGUACCCUCUCUCUUCUUC
osa-miR529a        -CUGUACCCUCUCUCUUCUUC
bdi-miR529-3p      GCUGUACCCUCUCUCUUCUUC
sbi-miR529         -CUGUACCCUCUCUCUUCUUC
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