TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA Family

miRNA
Species
Sequence
atr-miR477
Amborella trichopoda
AGAGGCCUUAGGGGAGAGUGG
csi-miR477a-5p
Citrus sinensis
ACCUCCCUCGAAGGCUUCCAA
csi-miR477b-5p
Citrus sinensis
CUCUCCCUCAAGGGCUUCUCU
csi-miR477c-5p
Citrus sinensis
ACUCUCCCUCAAGGGCUUCGC
csi-miR477d-3p
Citrus sinensis
UGAGGCCGUUGGGGAGAGUGG
csi-miR477d-5p
Citrus sinensis
ACUCUCCCUCAAGGGCUUCUGG
csi-miR477e-5p
Citrus sinensis
ACUCUCCCUCAAGGGCUUCUGA
dca-miR477-b2.0r1-4251
Daucus carota
ACUCUCCCUCAAGGGCUUCUG
fve-miR477a
Fragaria vesca
ACUCUCCCUCAAGGGCUUCUC
mdm-miR477a
Malus domestica
ACUCUCCCUCAAGAGCUUCUC
mdm-miR477b
Malus domestica
ACUCUCCCUCAAGGGCUUCGAC
mes-miR477a
Manihot esculenta
CUCUCCCUCAAGGGCUUCUG
mes-miR477b
Manihot esculenta
CUCUCCCUCAAGGGCUUCUG
mes-miR477c
Manihot esculenta
CUCUCCCUCAAGGGCUUCUG
mes-miR477d
Manihot esculenta
CUCUCCCUCAAGGGCUUCUC
mes-miR477e
Manihot esculenta
CUCUCCCUCAAGGGCUUCUG
mes-miR477f
Manihot esculenta
AUCUCCCUCAAAGGCUUCCA
mes-miR477g
Manihot esculenta
AUCUCCCUCAAAGGCUUCCA
mes-miR477h
Manihot esculenta
ACUCUCCCUCAAGGGCUUCAG
mes-miR477i
Manihot esculenta
ACUCUCCCUCAAGGGCUUCCG
mes-miR477j
Manihot esculenta
ACUCUCCCUAAAGGCUUCAAC
mes-miR477k
Manihot esculenta
ACUCUCCCUCAAGAGCUUCUC
ppe-miR477-5p
Prunus persica
ACUCUCCCUCAAAGGCUUCUAG
ppt-miR477a-5p
Physcomitrella patens
CUCUCCCUCAAAGGCUUCCA
ppt-miR477b
Physcomitrella patens
CUCUCCCUCAAAGGCUUCCA
ppt-miR477c
Physcomitrella patens
CUCUCCCUCAAAGGCUUCCA
ppt-miR477d
Physcomitrella patens
CUCUCCCUCAAAGGCUUCCA
ppt-miR477e
Physcomitrella patens
CUCUCCCUCAAAGGCUUCCA
ppt-miR477g-3p
Physcomitrella patens
GUUGGAAGCCUUCGUGGGAGA
ppt-miR477h
Physcomitrella patens
UCUCCCUCAAAGGCUUCCA
ptc-miR477a-3p
Populus trichocarpa
GGAUGCCUUUGGGGGAGAUUG
ptc-miR477a-5p
Populus trichocarpa
AUCUCCCUCAGAGGCUUCCAA
ptc-miR477b
Populus trichocarpa
AUCUCCCUCAGAGGCUUCCAA
ptc-miR477d-5p
Populus trichocarpa
AUCUCCCUCAAAGGCUUCCUCU
ptc-miR477e-3p
Populus trichocarpa
UGAGGCCUUUGGGGGAGAGUGG
ptc-miR477e-5p
Populus trichocarpa
ACUCUCCCUCAAGGCUUCCA
ptc-miR477f
Populus trichocarpa
GCUCUCCCUCAGGGCUUCCA
stu-miR477a-5p
Solanum tuberosum
CCUCUCCCUCAAGGGCUUCUC
stu-miR477b-5p
Solanum tuberosum
ACUCUCCCUCAAAGGCUUCUG
vvi-miR477a
Vitis vinifera
AUCUCCCUCAAAGGCUUCCAA
vvi-miR477b-3p
Vitis vinifera
CGAAGUCUUUGGGGAGAGUGG
vvi-miR477b-5p
Vitis vinifera
ACUCUUUCUCAAGGGCUUCUAG