TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

csi-miR477a-5p

Organism

Citrus sinensis

Species

Mature miRNA Sequence(5'-3')

ACCUCCCUCGAAGGCUUCCAA

miRBase

Precursor miRNA Sequence(5'-3')

AAAAUGGAGAAGCUUCCAACCUCCCUCGAAGGCUUCCAAUAUACCAUGCUUCCUCAAAUUGGCCUUGUAAGCAUGGGAAUGUUGGAAACCCUAGGGGGAGGUCGAAAGCUUAUGACUCCAUUUAAUCAGUUCUGUACGUG

miRBase

Precursor miRNA Structure(5'-3') 

----------------A        ----      C A         GAA  C         -A        ------  UC 
                 AAAUGGAG    AAGCUU C ACCUCCCUC   GG UUCCAAUAU  CCAUGCUU      CC  A
                 ||||||||    |||||| | |||||||||   || |||||||||  ||||||||      ||  A
                 UUUACCUC    UUCGAA G UGGAGGGGG   CC AAGGUUGUA  GGUACGAA      GG  U
GUGCAUGUCUUGACUAA        AGUA      A C         AUC  A         AG        UGUUCC  UU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ppt-miR477g-3p      GUUGGAAGCCUUCGUGGGAGA-------
csi-miR477a-5p      -------ACCUCCCUCGAAGGCUUCCAA
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