TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mes-miR477h

Organism

Manihot esculenta

Species

Mature miRNA Sequence(5'-3')

ACUCUCCCUCAAGGGCUUCAG

miRBase

Precursor miRNA Sequence(5'-3')

AAGGCAAUUCGCGUUUAACUCUCCCUCAAGGGCUUCAGCUAGCCAACGUCCCUUUGCAUUCUCUUUCAUGAGACUGGCGAUGAUGCACAGAGGAACGUGUUAAAGUUGAAUCCCGGCGGGGGGAGUUGGACGCGACCUGCCUU

miRBase

Precursor miRNA Structure(5'-3') 

      AU                  CAA   C       AGCCA    C      CAUUCUCUUUCAUG 
AAGGCA  UCGCGUUUAACUCUCCCU   GGG UUCAGCU     ACGU CCUUUG              A
||||||  ||||||||||||||||||   ||| |||||||     |||| ||||||              G
UUCCGU  AGCGCAGGUUGAGGGGGG   CCC AAGUUGA     UGCA GGAGAC              U
      CC                  CGG   U       AAUUG    A      ACGUAGUAGCGGUC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mes-miR477h         ACUCUCCCUCAAGGGCUUCAG-
csi-miR477d-5p      ACUCUCCCUCAAGGGCUUCUGG
ppe-miR477-5p       ACUCUCCCUCAAAGGCUUCUAG
vvi-miR477b-5p      ACUCUUUCUCAAGGGCUUCUAG
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