TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

csi-miR477d-5p

Organism

Citrus sinensis

Species

Mature miRNA Sequence(5'-3')

ACUCUCCCUCAAGGGCUUCUGG

miRBase

Precursor miRNA Sequence(5'-3')

UUGCUCACUCUCCCUCAAGGGCUUCUGGCGUUAAUUAAUGACAAUUAUUAAUGCUUGCAGCUGCCUGCCAGGCCUGAGGCCGUUGGGGAGAGUGGACAAAAG

miRBase

Precursor miRNA Structure(5'-3') 

---   C          U   G      U   GUUAAUUAAUGACAAUUAUU 
   UUG UCACUCUCCC CAA GGCUUC GGC                    A
   ||| |||||||||| ||| |||||| |||                     
   AAC GGUGAGAGGG GUU CCGGAG CCG                    G
GAA   A          -   G      U   GACCGUCCGUCGACGUUCGU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mes-miR477h         ACUCUCCCUCAAGGGCUUCAG-
csi-miR477d-5p      ACUCUCCCUCAAGGGCUUCUGG
ppe-miR477-5p       ACUCUCCCUCAAAGGCUUCUAG
vvi-miR477b-5p      ACUCUUUCUCAAGGGCUUCUAG
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