TarDB

Precursor miRNA Sequence(5'-3')

AUGUGUUGGAACUUGGGAAGCAGGUGCUUGAUCCUCUCCCUCAAAGGCUUCCAACAGCAUGAGCUAGUUUUAGUGUCUCAAAUAUUGUCUGUUGAGGCUAGCUCCUGUUCAGAUCUGUUAGAAGCCUCUGUGGGAGAGGAGCAAUCAGCUGCUGAGUGGCACCUCUGAUC

miRBase

Precursor miRNA Structure(5'-3')

------AU     GGA    GGGA     G  C   A         U  A       C     -------  U             -U U UCA 
        GUGUU   ACUU    AGCAG UG UUG UCCUCUCCC CA AGGCUUC AACAG       CA GAGCUAGUUUUAG  G C   A
        |||||   ||||    ||||| || ||| ||||||||| || ||||||| |||||       || |||||||||||||  | |   A
        CACGG   UGAG    UCGUC AC AAC AGGAGAGGG GU UCCGAAG UUGUC       GU CUCGAUCGGAGUU  C G   U
CUAGUCUC     ---    ----     G  U   G         U  C       A     UAGACUU  C             GU U UUA

ptc-miR477a-5p -AUCUCCCUCAGAGGCUUCCAA- ptc-miR477b -AUCUCCCUCAGAGGCUUCCAA- vvi-miR477a -AUCUCCCUCAAAGGCUUCCAA- mes-miR477f -AUCUCCCUCAAAGGCUUCCA-- mes-miR477g -AUCUCCCUCAAAGGCUUCCA-- ptc-miR477d-5p -AUCUCCCUCAAAGGCUUCCUCU ppt-miR477h --UCUCCCUCAAAGGCUUCCA-- ppt-miR477c -CUCUCCCUCAAAGGCUUCCA-- ppt-miR477a-5p -CUCUCCCUCAAAGGCUUCCA-- ppt-miR477d -CUCUCCCUCAAAGGCUUCCA-- ppt-miR477e -CUCUCCCUCAAAGGCUUCCA-- ppt-miR477b -CUCUCCCUCAAAGGCUUCCA-- csi-miR477b-5p -CUCUCCCUCAAGGGCUUCUCU- mes-miR477d -CUCUCCCUCAAGGGCUUCUC-- stu-miR477a-5p CCUCUCCCUCAAGGGCUUCUC-- ********* ******

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.