TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR166i-5p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GGAAUGUCGUCUGGCGCGAGA

miRBase

Precursor miRNA Sequence(5'-3')

GGGGAAUGUCGUCUGGCGCGAGACCGUACCAGACGACGUGCUCUCUCGGUCGUCGGACGGUCUCGGACCAGGCUUCAUUCCCC

miRBase

Precursor miRNA Structure(5'-3') 

        UC      CG         A  A      GUGC 
GGGGAAUG  GUCUGG  CGAGACCGU CC GACGAC    U
||||||||  ||||||  ||||||||| || ||||||    C
CCCCUUAC  CGGACC  GCUCUGGCA GG CUGCUG    U
        UU      AG         -  -      GCUC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR166i-5p      -GGAAUGUCGUCUGGUUCGAG-
fve-miR166d-5p      GGGAAUGUCGUCUGGUUCGA--
stu-miR166d-5p      -AGAAUGUCGUCUGGUUCGAGA
zma-miR166i-5p      -GGAAUGUCGUCUGGCGCGAGA
bdi-miR166i-5p      -GGCAUGUCGUGUGGCCCGAGA
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