TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

fve-miR166d-5p

Organism

Fragaria vesca

Species

Mature miRNA Sequence(5'-3')

GGGAAUGUCGUCUGGUUCGA

miRBase

Precursor miRNA Sequence(5'-3')

UCUCCCUAAUAGUUGAGGGGAAUGUCGUCUGGUUCGAAAUCGUUCUGUGAGCUCAAGUAUGAUCAUCAGGAUGAUUUCGGACCAGGCUUCAUUCCCCUCAAACUAGGAGA

miRBase

Precursor miRNA Structure(5'-3') 

     CUAA     -          UC                     -   G UCA 
UCUCC    UAGUU GAGGGGAAUG  GUCUGGUUCGAAAUCGUUCUG UGA C   A
|||||    ||||| ||||||||||  ||||||||||||||||||||| ||| |    
AGAGG    AUCAA CUCCCCUUAC  CGGACCAGGCUUUAGUAGGAC ACU G   A
     ----     A          UU                     U   A UAU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR166i-5p      -GGAAUGUCGUCUGGUUCGAG-
fve-miR166d-5p      GGGAAUGUCGUCUGGUUCGA--
stu-miR166d-5p      -AGAAUGUCGUCUGGUUCGAGA
zma-miR166i-5p      -GGAAUGUCGUCUGGCGCGAGA
bdi-miR166i-5p      -GGCAUGUCGUGUGGCCCGAGA
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