TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR166i-5p

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

GGCAUGUCGUGUGGCCCGAGA

miRBase

Precursor miRNA Sequence(5'-3')

UCUUGUUGAGGGGCAUGUCGUGUGGCCCGAGACCGGUUCAUGGCCGUCGAUCGGUCGGCUAAUGUCGCCGGCGGCGCGCGUCAGUGGAUGGUCUCGGACCAGGCUUCAUUCCCCCCAACGGC

miRBase

Precursor miRNA Structure(5'-3') 

UC      A    C   UC  G   C         G    -    ---     A    U    U 
  UUGUUG GGGG AUG  GU UGG CCGAGACCG UUCA UGGC   CGUCG UCGG CGGC A
  |||||| |||| |||  || ||| ||||||||| |||| ||||   ||||| |||| ||||  
  GGCAAC CCCC UAC  CG ACC GGCUCUGGU AGGU ACUG   GCGGC GGCC GCUG G
-C      C    U   UU  G   A         -    G    CGC     -    -    U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR166i-5p      -GGAAUGUCGUCUGGUUCGAG-
fve-miR166d-5p      GGGAAUGUCGUCUGGUUCGA--
stu-miR166d-5p      -AGAAUGUCGUCUGGUUCGAGA
zma-miR166i-5p      -GGAAUGUCGUCUGGCGCGAGA
bdi-miR166i-5p      -GGCAUGUCGUGUGGCCCGAGA
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