TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR166i-5p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

GGAAUGUCGUCUGGUUCGAG

miRBase

Precursor miRNA Sequence(5'-3')

GUUGAGGGGAAUGUCGUCUGGUUCGAGACCAUUCAUGCAAGUAGUCUCAGACAUGACUCUUCUGAGUGAUUUCGGACCAGGCUUCAUUCCCCUCAGC

miRBase

Precursor miRNA Structure(5'-3') 

             UC             C      U C   U    UCA 
GUUGAGGGGAAUG  GUCUGGUUCGAGA CAUUCA G AAG AGUC   G
|||||||||||||  ||||||||||||| |||||| | ||| ||||    
CGACUCCCCUUAC  CGGACCAGGCUUU GUGAGU C UUC UCAG   A
             UU             A      - -   -    UAC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR166i-5p      -GGAAUGUCGUCUGGUUCGAG-
fve-miR166d-5p      GGGAAUGUCGUCUGGUUCGA--
stu-miR166d-5p      -AGAAUGUCGUCUGGUUCGAGA
zma-miR166i-5p      -GGAAUGUCGUCUGGCGCGAGA
bdi-miR166i-5p      -GGCAUGUCGUGUGGCCCGAGA
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