TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sbi-miR1435b

Organism

Sorghum bicolor

Species

Mature miRNA Sequence(5'-3')

UUUCUUAAGUCAAACCUUUU

miRBase

Precursor miRNA Sequence(5'-3')

CUAUAGAAUUAUAAAAUAAUCUUUUACUCUCUCCAUCACCGAAUAAAUCAAUUCCUAAAGUUUUCUUAAGUCAAACCUUUUAAAGUUUAACAAAAUUUAUAGAAAAGAGCACCAAAAUUUAUGGCACUAGUAUAAAAUGUUGUCAUAAUAUGCUGAUUUGGUAUCAUAAAUACUUGUGCUCUUUUCUACAAAUUCAAUCAAACGUAAAAAAAGUUUUGAUUUAAAAUAACUCUACGAAUUGAAUGGAUUUAUUUAUGGAUGGAGUGA

miRBase

Precursor miRNA Structure(5'-3') 

CUAUAGAAUUAUAAAAUAAUCUUUUAC  U       ACC       -----       C  A    UUC          C     --AAA    AACAA     A             CAAA        C   -----      AA   U 
                           UC CUCCAUC   GAAUAAA     UCAAUUC UA AGUU   UUAAGUCAAA CUUUU     GUUU     AAUUU UAGAAAAGAGCAC    AUUUAUGG ACU     AGUAUA  AUG U
                           || |||||||   |||||||     ||||||| || ||||   |||||||||| |||||     ||||     ||||| |||||||||||||    |||||||| |||     ||||||  |||  
                           AG GAGGUAG   UUUAUUU     AGUUAAG AU UCAA   AAUUUAGUUU GAAAA     CAAA     UUAAA AUCUUUUCUCGUG    UAAAUACU UGG     UCGUAU  UAC C
---------------------------  U       GUA       AGGUA       C  C    UAA          U     AAAUG    CUAAC     C             UUCA        A   UUUAG      AA   U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR1435       UUUCUUAAGUCAAACUUUUU
sbi-miR1435b      UUUCUUAAGUCAAACCUUUU
sbi-miR1435a      UUUCUUAAGUCAAACUUUUC
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