TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR1435

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

UUUCUUAAGUCAAACUUUUU

miRBase

Precursor miRNA Sequence(5'-3')

ACUUUUCUUAAGUCAAACUUUUUUUUAGAUUUGAUCAAAUUUAUAAAAAAAAUAUAGCAAUAUUUUUAGAAAAAAAUAUGUUCAAUAUUAAAUGUAAUGAAACUAAUUUGGUGCUAUAACUGUUUUUAUAUUUUUCUAUAAUAAAUUUGAUUAAACUUUGAAGUAGUUUGACUUAAAAAAAGU

miRBase

Precursor miRNA Structure(5'-3') 

      C            U    UU  A               --AAA          C    U  U   AAAA    -AUG    A   U 
ACUUUU UUAAGUCAAACU UUUU  AG UUUGAUCAAAUUUAU     AAAAAUAUAG AAUA UU UAG    AAAU    UUCA UAU A
|||||| |||||||||||| ||||  || |||||||||||||||     |||||||||| |||| || |||    ||||    |||| ||| A
UGAAAA AAUUCAGUUUGA GAAG  UC AAAUUAGUUUAAAUA     UUUUUAUAUU UUGU AA AUC    UUUA    AAGU AUG G
      A            U    UU  -               AUAUC          U    C  U   GUGG    AUCA    A   U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR1435       UUUCUUAAGUCAAACUUUUU
sbi-miR1435b      UUUCUUAAGUCAAACCUUUU
sbi-miR1435a      UUUCUUAAGUCAAACUUUUC
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