TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA Family

miRNA
Species
Sequence
aly-miR390a-3p
Arabidopsis lyrata
CGCUAUCCAUCCUGAGUUUCA
aly-miR390a-5p
Arabidopsis lyrata
AAGCUCAGGAGGGAUAGCGCC
aly-miR390b-3p
Arabidopsis lyrata
CGCUAUCCAUCCUGAGUUCCA
aly-miR390b-5p
Arabidopsis lyrata
AAGCUCAGGAGGGAUAGCGCC
ath-miR390a-3p
Arabidopsis thaliana
CGCUAUCCAUCCUGAGUUUCA
ath-miR390a-5p
Arabidopsis thaliana
AAGCUCAGGAGGGAUAGCGCC
ath-miR390b-3p
Arabidopsis thaliana
CGCUAUCCAUCCUGAGUUCC
ath-miR390b-5p
Arabidopsis thaliana
AAGCUCAGGAGGGAUAGCGCC
atr-miR390.1
Amborella trichopoda
UAAAGCUCAGGAGGGAUAGCG
atr-miR390.2
Amborella trichopoda
AAGCUCAGGAGGGAUAGCGCC
bdi-miR390a-3p
Brachypodium distachyon
CGCUAUCUAUCCUGAGCUCCA
bdi-miR390a-5p
Brachypodium distachyon
AAGCUCAGGAGGGAUAGCGCC
bol-miR390a
Brassica oleracea
AAGCUCAGGAGGGAUAGCGCC
bol-miR390b
Brassica oleracea
AAGCUCAGGAGGGAUAGCGCC
bra-miR390a
Brassica rapa
AAGCUCAGGAGGGAUAGCGCC
bra-miR390b
Brassica rapa
AAGCUCAGGAGGGAUAGCGCC
bra-miR390c
Brassica rapa
AAGCUCAGGAGGGAUAGCGCC
bra-miR390d
Brassica rapa
AAGCUCAGGAGGGAUAGCGCC
bra-miR390e
Brassica rapa
AAGCUCAGGAGGGAUAGCGCC
bra-miR390f
Brassica rapa
AAGCUCAGGAGGGAUAGCGCC
cpa-miR390a
Carica papaya
AAGCUCAGGAGGGAUAGCGCC
cpa-miR390b
Carica papaya
AAGCUCAGGAGGGAUAGCGCC
cru-miR390a
Capsella rubella
AAGCUCAGGAGGGAUAGCGCC
cru-miR390b
Capsella rubella
AAGCUCAGGAGGGAUAGCGCC
csi-miR390a-3p
Citrus sinensis
CGCUAUCCAUCCUGAGUUUCA
csi-miR390a-5p
Citrus sinensis
AAGCUCAGGAGGGAUAGCGCC
csi-miR390b-5p
Citrus sinensis
AGCUCAGGAGGGAUAGCGCC
esa-miR390a
Eutrema salsugineum
AAGCUCAGGAGGGAUAGCGCC
esa-miR390b
Eutrema salsugineum
AAGCUCAGGAGGGAUAGCGCC
fve-miR390a
Fragaria vesca
AAGCUCAGGAGGGAUAGCGCC
fve-miR390b
Fragaria vesca
AAGCUCAGGAGGGAUAGCGCC
gma-miR390a-3p
Glycine max
CGCUAUCCAUCCUGAGUUUC
gma-miR390a-5p
Glycine max
AAGCUCAGGAGGGAUAGCGCC
gma-miR390b-5p
Glycine max
AAGCUCAGGAGGGAUAGCACC
gma-miR390c
Glycine max
CGCUAUCCAUCCUGAGUUUC
gma-miR390d
Glycine max
AAGCUCAGGAGGGAUAGCACC
gma-miR390e
Glycine max
AGCUCAGGAGGGAUAGCGCC
gma-miR390f
Glycine max
AAGCUCAGGAGGGAUAGCGCC
gma-miR390g
Glycine max
AAGCUCAGGAGGGAUAGCGCC
lus-miR390a
Linum usitatissimum
AAGCUCAGGAGGGAUAGCGCC
lus-miR390b
Linum usitatissimum
AAGCUCAGGAGGGAUAGCGCC
lus-miR390c
Linum usitatissimum
AAGCUCAGGAGGGAUAGCGCC
lus-miR390d
Linum usitatissimum
AAGCUCAGGAGGGAUAGCGCC
mac-miR390a
Musa acuminata
AAGCUCAGGAGGGAUAGCGCC
mac-miR390b
Musa acuminata
AAGCUCAGGAGGGAUAGCGCC
mac-miR390c
Musa acuminata
AAGCUCAGGAGGGAUAGCGCC
mac-miR390d
Musa acuminata
AAGCUCAGGAGGGAUAGCGCC
mac-miR390e
Musa acuminata
AAGCUCAGGAGGGAUAGCGCC
mac-miR390f
Musa acuminata
AAGCUCAGGAGGGAUAGCGCC
mdm-miR390a
Malus domestica
AAGCUCAGGAGGGAUAGCGCC
mdm-miR390b
Malus domestica
AAGCUCAGGAGGGAUAGCGCC
mdm-miR390c
Malus domestica
AAGCUCAGGAGGGAUAGCGCC
mdm-miR390d
Malus domestica
AAGCUCAGGAGGGAUAGCGCC
mdm-miR390e
Malus domestica
AAGCUCAGGAGGGAUAGCGCC
mdm-miR390f
Malus domestica
AAGCUCAGGAGGGAUAGCGCC
mes-miR390
Manihot esculenta
CGCUAUCCAUCCUGAGUUUC
mes-miR390b
Manihot esculenta
AAGCUCAGGAGGGAUAGCGCC
mpo-miR390-b3.0r1-12192
Marchantia polymorpha
AAGCUCAGGAGGGAUAGCGUC
mtr-miR390
Medicago truncatula
AAGCUCAGGAGGGAUAGCGCC
osa-miR390-3p
Oryza sativa
CGCUAUCUAUCCUGAGCUCC
osa-miR390-5p
Oryza sativa
AAGCUCAGGAGGGAUAGCGCC
pha-miR390
Panicum hallii
AAGCUCAGGAGGGAUAGCGCC
ppe-miR390
Prunus persica
AAGCUCAGGAGGGAUAGCGCC
ppt-miR390a
Physcomitrella patens
AAGCUCAGGAGGGAUAGCGCC
ppt-miR390b
Physcomitrella patens
AAGCUCAGGAGGGAUAGCGCC
ppt-miR390c-5p
Physcomitrella patens
GAGCUCAGGAGGGAUAGCGCC
ptc-miR390a
Populus trichocarpa
AAGCUCAGGAGGGAUAGCGCC
ptc-miR390b
Populus trichocarpa
AAGCUCAGGAGGGAUAGCGCC
ptc-miR390c
Populus trichocarpa
AAGCUCAGGAGGGAUAGCGCC
ptc-miR390d-3p
Populus trichocarpa
CGCUAUCCAUCCUGAGUUUUA
ptc-miR390d-5p
Populus trichocarpa
AAGCUCAGGAGGGAUAGCGCC
pvi-miR390a
Panicum virgatum
AAGCUCAGGAGGGAUAGCGCC
pvi-miR390b
Panicum virgatum
AAGCUCAGGAGGGAUAGCGCC
pvi-miR390c
Panicum virgatum
AAGCUCAGGAGGGAUAGCGCC
pvi-miR390d
Panicum virgatum
AAGCUCAGGAGGGAUAGCGCC
pvi-miR390e
Panicum virgatum
AAGCUCAGGAGGGAUAGCGCC
rco-miR390a
Ricinus communis
AAGCUCAGGAGGGAUAGCGCC
rco-miR390b
Ricinus communis
AAGCUCAGGAGGGAUAGCGCC
sbi-miR390
Sorghum bicolor
AAGCUCAGGAGGGAUAGCGCC
sit-miR390
Setaria italica
AAGCUCAGGAGGGAUAGCGCC
sly-miR390a-3p
Solanum lycopersicum
CGCUAUCCAUCCUGAGUUUUA
sly-miR390a-5p
Solanum lycopersicum
AAGCUCAGGAGGGAUAGCACC
sly-miR390b-3p
Solanum lycopersicum
CGCUAUCCAUCCUGAGUUUCA
sly-miR390b-5p
Solanum lycopersicum
AAGCUCAGGAGGGAUAGCGCC
spo-miR390
Spirodela polyrhiza
AAGCUCAGGAGGGAUAGCGCC
stu-miR390-3p
Solanum tuberosum
CGCUAUCCAUCUUGAGUUUUA
stu-miR390-5p
Solanum tuberosum
AAGCUCAGGAGGGAUAGCACC
tcc-miR390a
Theobroma cacao
AAGCUCAGGAGGGAUAGCGCC
tcc-miR390b
Theobroma cacao
AAGCUCAGGAGGGAUAGCGCC
vvi-miR390
Vitis vinifera
AAGCUCAGGAGGGAUAGCGCC
zma-miR390a-3p
Zea mays
CGCUAUCUAUCCUGAGCUCCA
zma-miR390a-5p
Zea mays
AAGCUCAGGAGGGAUAGCGCC
zma-miR390b-3p
Zea mays
CGCUAUCUAUCCUGAGCUCCA
zma-miR390b-5p
Zea mays
AAGCUCAGGAGGGAUAGCGCC
zos-miR390a
Zostera marina
AAGCUCAGGAGGGAUAGCGCC
zos-miR390b
Zostera marina
AAGCUCAGGAGGGAUAGCGCC