TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR827-5p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

UUUGUUGGUGGUCAUUUAACC

miRBase

Precursor miRNA Sequence(5'-3')

GUUUUGUUGGUGGUCAUUUAACCAUGCAUGCUUCGAUCGAUGGAUUGGUGCAUGCAUGGAUUAUUGCAUAGUGUGAUGCAUGUGGCGCAUCAGUGCAUGGUUAGAUGACCAUCAGCAAACAU

miRBase

Precursor miRNA Structure(5'-3') 

-GU                           GCUUCGAUCGAUGGAUUGGUGCAUGCAUGG 
   UUUGUUGGUGGUCAUUUAACCAUGCAU                              A
   |||||||||||||||||||||||||||                              U
   AAACGACUACCAGUAGAUUGGUACGUG                              U
UAC                           ACUACGCGGUGUACGUAGUGUGAUACGUUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

pha-miR827         UUUUGUUGGUUGUCAUCUAACC
bdi-miR827-5p      UUUUGUUGGUUGUCAUCUAACC
zma-miR827-5p      -UUUGUUGGUGGUCAUUUAACC
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