TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

pha-miR827

Organism

Panicum hallii

Species

Mature miRNA Sequence(5'-3')

UUUUGUUGGUUGUCAUCUAACC

PmiREN

Precursor miRNA Sequence(5'-3')

CGAATGCAGCTCCGAACTTGTTTTGTTGGTTGTCATCTAACCATGCTTTTAATTCGATCAGTGCATGGATCATGGATGGGGATTGGGATGGACATGGCACTGTCACGGGCGCTGTGAACACAGCATGGTTAGATGACCATCAGCAAACATGTTCATGAGGCATGCAGAA

PmiREN

Precursor miRNA Structure(5'-3') 

CGAA    -  -  -C    U     U      U                UUUAAUUCGAUCAGUGCAUGGAUCAUGGAUGGGGAU 
    UGCA GC UC  GAAC UGUUU GUUGGU GUCAUCUAACCAUGCU                                    U
    |||| || ||  |||| ||||| |||||| ||||||||||||||||                                     
    ACGU CG AG  CUUG ACAAA CGACUA CAGUAGAUUGGUACGA                                    G
-AAG    A  G  UA    U     -      C                CACAAGUGUCGCGGGCACUGUCACGGUACAGGUAGG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

pha-miR827         UUUUGUUGGUUGUCAUCUAACC
bdi-miR827-5p      UUUUGUUGGUUGUCAUCUAACC
zma-miR827-5p      -UUUGUUGGUGGUCAUUUAACC
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