TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR827-5p

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

UUUUGUUGGUUGUCAUCUAACC

miRBase

Precursor miRNA Sequence(5'-3')

AUUGAGCCGAUUCAUGCAGCUCUGAACUUGUUUUGUUGGUUGUCAUCUAACCAUCGAUCGGUCCGUGCUUCGGUGCUUGUGCCAUGAUUUUGCAUCAUCACACCGGCGAUGGUUAGAUGACCAUCAGCAAACAUGUUCGUGAGACAUGCCGUGCGUCCUGAGCU

miRBase

Precursor miRNA Structure(5'-3') 

AUUG   - --   U    -  - -   -     U     U      U               A     CC   CUUC     UUGUGC 
    AGC C  GAU CAUG CA G CUC UGAAC UGUUU GUUGGU GUCAUCUAACCAUCG UCGGU  GUG    GGUGC      C
    ||| |  ||| |||| || | ||| ||||| ||||| |||||| ||||||||||||||| |||||  |||    |||||      A
    UCG G  CUG GUGC GU C GAG GCUUG ACAAA CGACUA CAGUAGAUUGGUAGC GGCCA  CAC    CUACG      A
----   A UC   C    C  A A   U     U     -      C               -     --   --UA     UUUUAG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

pha-miR827         UUUUGUUGGUUGUCAUCUAACC
bdi-miR827-5p      UUUUGUUGGUUGUCAUCUAACC
zma-miR827-5p      -UUUGUUGGUGGUCAUUUAACC
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