TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR171e-5p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

UGUUGGCUCGGCUCACUCAGA

miRBase

Precursor miRNA Sequence(5'-3')

AGAAAUGGAAUAGUAGCUAUGAUGUUGGCUCGGCUCACUCAGACGACGUACGCGCGCGAGAUCAUGUGCUAUGCCGCUGCUGUUUCUGAUUGAGCCGUGCCAAUAUCUUAGUACUCUUCCAUGCAU

miRBase

Precursor miRNA Structure(5'-3') 

AGAA      U    G   U         U       C     C   -   C   C   -  AUC 
    AUGGAA AGUA CUA GAUGUUGGC CGGCUCA UCAGA GAC GUA GCG GCG AG   A
    |||||| |||| ||| ||||||||| ||||||| ||||| ||| ||| ||| ||| ||    
    UACCUU UCAU GAU CUAUAACCG GCCGAGU AGUCU UUG CGU CGC CGU UC   U
UACG      C    -   U         U       U     -   U   -   -   A  GUG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR171e-5p      UGUUGGCUCGGCUCACUCAGA
osa-miR171d-5p      UGUUGGCCCGGCUCACUCAGA
hvu-miR171-5p       UGUUGGCUCGACUCACUCAGA
bdi-miR171d-5p      UGUUGGCUCGACUCACUCAGA
osa-miR171e-5p      UGUUGGCUCGGCUCACUCAGA
zma-miR171d-5p      UGUUGGCUCGGCUCACUCAGA
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