TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR171e-5p

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

UGUUGGCUCGGCUCACUCAGA

miRBase

Precursor miRNA Sequence(5'-3')

UGGUAGCUAUGAUGUUGGCUCGGCUCACUCAGACGGCAUUGGCGUGAUGCAAAGCAUGCAUGCGUGCUUGCUAGCUCACUUGUGUUUCUGAUUGAGCCGUGCCAAUAUCUUAGUGCUCU

miRBase

Precursor miRNA Structure(5'-3') 

-U    G   U         U       C     C     UGGC    U  AA    U   U 
  GGUA CUA GAUGUUGGC CGGCUCA UCAGA GGCAU    GUGA GC  AGCA GCA G
  |||| ||| ||||||||| ||||||| ||||| |||||    |||| ||  |||| |||  
  UCGU GAU CUAUAACCG GCCGAGU AGUCU UUGUG    CACU CG  UCGU CGU U
UC    -   U         U       U     -     --UU    -  -A    U   G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR171e-5p      UGUUGGCUCGGCUCACUCAGA
osa-miR171d-5p      UGUUGGCCCGGCUCACUCAGA
hvu-miR171-5p       UGUUGGCUCGACUCACUCAGA
bdi-miR171d-5p      UGUUGGCUCGACUCACUCAGA
osa-miR171e-5p      UGUUGGCUCGGCUCACUCAGA
zma-miR171d-5p      UGUUGGCUCGGCUCACUCAGA
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