TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR171d-5p

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

UGUUGGCCCGGCUCACUCAGA

miRBase

Precursor miRNA Sequence(5'-3')

UUGUAGCUAUGAUGUUGGCCCGGCUCACUCAGAUGGAUCAUCGGUGCAGAAGAGUGCAUGAAUCUGAUGCAGUCUCAGUGUAGUAUGCUCCAUGCUGGAACUUCUGAUUGAGCCGUGCCAAUAUCUCAGCACCAU

miRBase

Precursor miRNA Structure(5'-3') 

UUGUA   AU         C       C     ----------    U   C G    -GA   G     GA 
     GCU  GAUGUUGGC CGGCUCA UCAGA          UGGA CAU G UGCA   AGA UGCAU  A
     |||  ||||||||| ||||||| |||||          |||| ||| | ||||   ||| |||||  U
     CGA  CUAUAACCG GCCGAGU AGUCU          ACCU GUA U AUGU   UCU ACGUA  G
UACCA   CU         U       U     UCAAGGUCGU    C   - G    GAC   G     GU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR171e-5p      UGUUGGCUCGGCUCACUCAGA
osa-miR171d-5p      UGUUGGCCCGGCUCACUCAGA
hvu-miR171-5p       UGUUGGCUCGACUCACUCAGA
bdi-miR171d-5p      UGUUGGCUCGACUCACUCAGA
osa-miR171e-5p      UGUUGGCUCGGCUCACUCAGA
zma-miR171d-5p      UGUUGGCUCGGCUCACUCAGA
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