TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR167i-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GAUCAUGUUGCAGCUUCAC

miRBase

Precursor miRNA Sequence(5'-3')

ACUUCGCUGGUGUGAGAGCUUGAAGCUGCCAGCAUGAUCUGGCURCUCAAACGCCGCCGGCCUCCCAAGUGCUCGAUCGGUGGCGCUUCACCAGAUCAUGUUGCAGCUUCACUCUCUCGCAACCAGCGAA

miRBase

Precursor miRNA Structure(5'-3') 

ACU        -       CU         C            CURCUCAAA        -----  -  C 
   UCGCUGGU GUGAGAG  UGAAGCUGC AGCAUGAUCUGG         CGCCGCCG     GC CU C
   |||||||| |||||||  ||||||||| ||||||||||||         ||||||||     || ||  
   AGCGACCA CGCUCUC  ACUUCGACG UUGUACUAGACC         GCGGUGGC     CG GA A
--A        A       UC         -            ----ACUUC        UAGCU  U  A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

csi-miR167a-3p      AGAUCAUCUG-GCAGUUUCACC
mdm-miR167a         AGAUCAUCUG-GCAGUUUCACC
ptc-miR167h-3p      AGAUCAUGUG-GCAGUUUCACC
ptc-miR167g-3p      AGAUCAUGUG-GCAGUUUCACC
ptc-miR167f-3p      AGAUCAUGUG-GCAGUUUCACC
ath-miR167a-3p      -GAUCAUGUUCGCAGUUUCACC
aly-miR167a-3p      -GAUCAUGUUCGCAGUUUCACC
zma-miR167h-3p      -GAUCAUGUU-GCAGCUUCAC-
bdi-miR167d-3p      AGAUCAUGUU-GCAGCUUCAC-
zma-miR167i-3p      -GAUCAUGUU-GCAGCUUCAC-
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