TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mdm-miR167a

Organism

Malus domestica

Species

Mature miRNA Sequence(5'-3')

AGAUCAUCUGGCAGUUUCACC

miRBase

Precursor miRNA Sequence(5'-3')

UCAUGCACUGGUAGCGGUUGAAGCUGCCAGCAUGAUCUUAUAACUCCCWACUUCGUUUAGGGAAGAUCAGAUCAUCUGGCAGUUUCACCUGUUACUGGUAGCAUGA

miRBase

Precursor miRNA Structure(5'-3') 

      -           U            C       U  AAC    WACU 
UCAUGC ACUGGUAGCGG UGAAGCUGCCAG AUGAUCU AU   UCCC    U
|||||| ||||||||||| |||||||||||| ||||||| ||   ||||    C
AGUACG UGGUCAUUGUC ACUUUGACGGUC UACUAGA UA   AGGG    U
      A           C            -       C  -GA    AUUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

csi-miR167a-3p      AGAUCAUCUG-GCAGUUUCACC
mdm-miR167a         AGAUCAUCUG-GCAGUUUCACC
ptc-miR167h-3p      AGAUCAUGUG-GCAGUUUCACC
ptc-miR167g-3p      AGAUCAUGUG-GCAGUUUCACC
ptc-miR167f-3p      AGAUCAUGUG-GCAGUUUCACC
ath-miR167a-3p      -GAUCAUGUUCGCAGUUUCACC
aly-miR167a-3p      -GAUCAUGUUCGCAGUUUCACC
zma-miR167h-3p      -GAUCAUGUU-GCAGCUUCAC-
bdi-miR167d-3p      AGAUCAUGUU-GCAGCUUCAC-
zma-miR167i-3p      -GAUCAUGUU-GCAGCUUCAC-
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