TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR167h-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GAUCAUGUUGCAGCUUCAC

miRBase

Precursor miRNA Sequence(5'-3')

ACUUUGCUGCUGUGAGAGGUUGAAGCUGCCAGCAUGAUCUGGCUGCUCAGACGCCGGCGGGCGUCUCGAGUGCUCGCUCGAUCGUCGGUGACGCUUGGAUUCACCAGAUCAUGUUGCAGCUUCACUCUCUCGCAGCCAGCAAA

miRBase

Precursor miRNA Structure(5'-3') 

ACU      -          U         C            C  -C  AGACGCCGGCGGGCGUCUCGAGU 
   UUGCUG CUGUGAGAGG UGAAGCUGC AGCAUGAUCUGG UG  UC                       G
   |||||| |||||||||| ||||||||| |||||||||||| ||  ||                       C
   AACGAC GACGCUCUCU ACUUCGACG UUGUACUAGACC AC  AG                       G
--A      C          C         -            -  UU  GUUCGCAGUGGCUGCUAGCUCGC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

csi-miR167a-3p      AGAUCAUCUG-GCAGUUUCACC
mdm-miR167a         AGAUCAUCUG-GCAGUUUCACC
ptc-miR167h-3p      AGAUCAUGUG-GCAGUUUCACC
ptc-miR167g-3p      AGAUCAUGUG-GCAGUUUCACC
ptc-miR167f-3p      AGAUCAUGUG-GCAGUUUCACC
ath-miR167a-3p      -GAUCAUGUUCGCAGUUUCACC
aly-miR167a-3p      -GAUCAUGUUCGCAGUUUCACC
zma-miR167h-3p      -GAUCAUGUU-GCAGCUUCAC-
bdi-miR167d-3p      AGAUCAUGUU-GCAGCUUCAC-
zma-miR167i-3p      -GAUCAUGUU-GCAGCUUCAC-
                     ****** *  **** *****