TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR167g-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GGUCAUGCUGUAGUUUCAUC

miRBase

Precursor miRNA Sequence(5'-3')

AGUGGUGCACCACGAGUUGGUGAAGCUGCCAGCAUGAUCUGGUUAUGAUGGUGGUGGUAUAUGUAAGAUGGAUGUAAUCUAUACUACUACCGGCCCCUGUCACUCUCUCUCUCUCCCCCGUCCCUGACUGUCAUAUAUGGAUCGACGAAUCCAAGAUGAGAGGGGAAGGGAGAGAGAGAGAGGGUAAUUAAUGAGCACCAGGACCAGGUCAUGCUGUAGUUUCAUCUGCUGGUGGCCGCACAU

miRBase

Precursor miRNA Structure(5'-3') 

AGUG    -A    G   U           C              A  AUGGUGGUGGUAUAUGUAAGAUGGAUGUAAUCUAUACUACUACCGGCCCCUGUCACUCUCUCUCUCUCCCCCGU 
    GUGC  CCAC AGU GGUGAAGCUGC AGCAUGAUCUGGUU UG                                                                          C
    ||||  |||| ||| ||||||||||| |||||||||||||| ||                                                                          C
    CACG  GGUG UCG CUACUUUGAUG UCGUACUGGACCAG AC                                                                          G
--UA    CC    G   U           -              G  CACGAGUAAUUAAUGGGAGAGAGAGAGAGGGAAGGGGAGAGUAGAACCUAAGCAGCUAGGUAUAUACUGUCAGU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR167h-3p      AGGUCAUGCUGU-AGUUUCAUC
zma-miR167g-3p      -GGUCAUGCUGU-AGUUUCAUC
bdi-miR167e-3p      AGGUCAUGCUGG-AGUUUCAUC
aly-miR167c-3p      AGGUCAUGCUGGUAGUUUCAC-
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