TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR167h-3p

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

AGGUCAUGCUGUAGUUUCAUC

miRBase

Precursor miRNA Sequence(5'-3')

CACAAGUUGGUGAAGCUGCCAGCAUGAUCUGAUGAUGAUGAUGAUCCACCUCUCUCAUCUGUGUUCUUGAUUAAUUACGGAUCAAUCGAUCAGGUCAUGCUGUAGUUUCAUCUGCUGGUU

miRBase

Precursor miRNA Structure(5'-3') 

C  A   U           C             GA    GA      -ACCUCUC   UCUG 
 AC AGU GGUGAAGCUGC AGCAUGAUCUGAU  UGAU  UGAUCC        UCA    U
 || ||| ||||||||||| |||||||||||||  ||||  ||||||        |||     
 UG UCG CUACUUUGAUG UCGUACUGGACUA  GCUA  ACUAGG        AGU    U
U  G   U           -             --    --      CAUUAAUU   UCUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR167h-3p      AGGUCAUGCUGU-AGUUUCAUC
zma-miR167g-3p      -GGUCAUGCUGU-AGUUUCAUC
bdi-miR167e-3p      AGGUCAUGCUGG-AGUUUCAUC
aly-miR167c-3p      AGGUCAUGCUGGUAGUUUCAC-
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