TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR167e-3p

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

AGGUCAUGCUGGAGUUUCAUC

miRBase

Precursor miRNA Sequence(5'-3')

CAUGUGCACCAUACAAGCUGGUGAAGCUGCCAGCAUGAUCUGAUCUGACCAUAUAUCUAGAUUGGCAUGGAUGGAUAUGUGAUAUGAUCUGAUCAGGUCAUGCUGGAGUUUCAUCUGCUGGUUGGG

miRBase

Precursor miRNA Structure(5'-3') 

CAUGUGCA   UA  A  U         G                U  - ----          GAUUG 
        CCA  CA GC GGUGAAGCU CCAGCAUGAUCUGAUC GA C    CAUAUAUCUA     G
        |||  || || ||||||||| |||||||||||||||| || |    ||||||||||      
        GGU  GU CG CUACUUUGA GGUCGUACUGGACUAG CU G    GUGUAUAGGU     U
-------G   UG  -  U         -                U  A UAUA          AGGUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR167h-3p      AGGUCAUGCUGU-AGUUUCAUC
zma-miR167g-3p      -GGUCAUGCUGU-AGUUUCAUC
bdi-miR167e-3p      AGGUCAUGCUGG-AGUUUCAUC
aly-miR167c-3p      AGGUCAUGCUGGUAGUUUCAC-
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