TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR160g-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GCGUGCAAGGAGCCAAGCAUG

miRBase

Precursor miRNA Sequence(5'-3')

AUGCCUGGCUCCCUGUAUGCCACACAUGUAGCCCAACCCGUGAUGUGAUUGGAUGCUGUGGGUGGCGUGCAAGGAGCCAAGCAUGU

miRBase

Precursor miRNA Structure(5'-3') 

--    C       C          A   -   GC    C CGU 
  AUGC UGGCUCC UGUAUGCCAC CAU GUA  CCAA C   G
  |||| ||||||| |||||||||| ||| |||  |||| |    
  UACG ACCGAGG ACGUGCGGUG GUG CGU  GGUU G   G
UG    A       A          G   U   -A    A UGU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR160c-3p      GCGUGCACGGAGCCAAGCAUA
bdi-miR160d-3p      GCGUGCACGGAGCCAAGCAUA
bdi-miR160b-3p      GCGUGCAAGGAGCCAAGCAUG
bdi-miR160c-3p      GCGUGCAAGGAGCCAAGCAUG
zma-miR160g-3p      GCGUGCAAGGAGCCAAGCAUG
zma-miR160b-3p      GCGUGCAAGGAGCCAAGCAUG
zma-miR160c-3p      GCGUGCAUGGUGCCAAGCAUA
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