TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR160b-3p

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

GCGUGCAAGGAGCCAAGCAUG

miRBase

Precursor miRNA Sequence(5'-3')

UCGAUCCGAAUUAAUCGAUCAUCGGCUGCGUGCCUGGCUCCCUGUAUGCCACACAUGUAGCCCGAUCCGUGCCGAGGUUGGAUGCUGUGGGUGGCGUGCAAGGAGCCAAGCAUGCAUACAUACAAGCUCCAUGAUCGAUCCAUCCA

miRBase

Precursor miRNA Structure(5'-3') 

UCGAUCCGAAUUA         -C    ---------      C       C          A   -   GC      -    
             AUCGAUCAU  GGCU         GCGUGC UGGCUCC UGUAUGCCAC CAU GUA  CCGAUC CGU 
             |||||||||  ||||         |||||| ||||||| |||||||||| ||| |||  |||||| || G
             UAGCUAGUA  UCGA         CGUACG ACCGAGG ACGUGCGGUG GUG CGU  GGUUGG GCG 
------ACCUACC         CC    ACAUACAUA      A       A          G   U   -A      A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR160c-3p      GCGUGCACGGAGCCAAGCAUA
bdi-miR160d-3p      GCGUGCACGGAGCCAAGCAUA
bdi-miR160b-3p      GCGUGCAAGGAGCCAAGCAUG
bdi-miR160c-3p      GCGUGCAAGGAGCCAAGCAUG
zma-miR160g-3p      GCGUGCAAGGAGCCAAGCAUG
zma-miR160b-3p      GCGUGCAAGGAGCCAAGCAUG
zma-miR160c-3p      GCGUGCAUGGUGCCAAGCAUA
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