TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR160b-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GCGUGCAAGGAGCCAAGCAUG

miRBase

Precursor miRNA Sequence(5'-3')

CGAUCGGCUCGUGUCGUGUGUGCCUGGCUCCCUGUAUGCCACACAUGUAGCCAACCCGUGGCGUGAUUGGAUGCUGUGGGUGGCGUGCAAGGAGCCAAGCAUGCAUAACAGGCCAUGAUCA

miRBase

Precursor miRNA Structure(5'-3') 

C    --    CG   C        C       C          A   -   G    C -    
 GAUC  GGCU  UGU GUGUGUGC UGGCUCC UGUAUGCCAC CAU GUA CCAA C CGU 
 ||||  ||||  ||| |||||||| ||||||| |||||||||| ||| ||| |||| | || G
 CUAG  CCGG  ACA UACGUACG ACCGAGG ACGUGCGGUG GUG CGU GGUU G GCG 
A    UA    --   A        A       A          G   U   A    A U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR160c-3p      GCGUGCACGGAGCCAAGCAUA
bdi-miR160d-3p      GCGUGCACGGAGCCAAGCAUA
bdi-miR160b-3p      GCGUGCAAGGAGCCAAGCAUG
bdi-miR160c-3p      GCGUGCAAGGAGCCAAGCAUG
zma-miR160g-3p      GCGUGCAAGGAGCCAAGCAUG
zma-miR160b-3p      GCGUGCAAGGAGCCAAGCAUG
zma-miR160c-3p      GCGUGCAUGGUGCCAAGCAUA
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