TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

vvi-miR2950-5p

Organism

Vitis vinifera

Species

Mature miRNA Sequence(5'-3')

UUCCAUCUCUUGCACACUGGA

miRBase

Precursor miRNA Sequence(5'-3')

UGGCUUACAUGGGCUUGUGAUGUAUUCCAUCUCUUGCACACUGGACCAGCGCUCCAGCUGCAGUUUGGUGUGCACGGGAUGGAAUACAUCAUGGAUUCAUGAUGUGG

miRBase

Precursor miRNA Structure(5'-3') 

UGGCUUA      C                   U            --    GC 
       CAUGGG UUGUGAUGUAUUCCAUCUC UGCACACUGGAC  CAGC  U
       |||||| ||||||||||||||||||| ||||||||||||  ||||   
       GUACUU GGUACUACAUAAGGUAGGG ACGUGUGGUUUG  GUCG  A
-GGUGUA      A                   C            AC    AC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

vvi-miR2950-5p      UUCCAUCUCUUGCACACUGGA
atr-miR2950         UUCCAUCUCUUGCACACUGGA
mes-miR2950         UUCCAUCUCUUGCACACUGGA
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