TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mes-miR2950

Organism

Manihot esculenta

Species

Mature miRNA Sequence(5'-3')

UUCCAUCUCUUGCACACUGGA

miRBase

Precursor miRNA Sequence(5'-3')

CAUGGGUUUAUGGUGUAUUCCAUCUCUUGCACACUGGACCAGUAAAUUUCGGCCACUUCAGCACUGGUUGGUGUGCAAGUGAUGGAAUACAUCAUUGAUCUAUG

miRBase

Precursor miRNA Structure(5'-3') 

        U               U         UG       AAAUUUCG  CA 
CAUGGGUU AUGGUGUAUUCCAUC CUUGCACAC  GACCAGU        GC  C
|||||||| ||||||||||||||| |||||||||  |||||||        ||  U
GUAUCUAG UACUACAUAAGGUAG GAACGUGUG  UUGGUCA        CG  A
        U               U         -G       --------  AC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

vvi-miR2950-5p      UUCCAUCUCUUGCACACUGGA
atr-miR2950         UUCCAUCUCUUGCACACUGGA
mes-miR2950         UUCCAUCUCUUGCACACUGGA
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