TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

atr-miR2950

Organism

Amborella trichopoda

Species

Mature miRNA Sequence(5'-3')

UUCCAUCUCUUGCACACUGGA

miRBase

Precursor miRNA Sequence(5'-3')

UUGUGGUUUAUUCCAUCUCUUGCACACUGGACCAGUGCUUCAGCAACUGGUUGGUGUGCAGGGGGUGGAAUAUGGCACCC

miRBase

Precursor miRNA Structure(5'-3') 

UU   G U                   UG       -  U 
  GUG U UAUUCCAUCUCUUGCACAC  GACCAGU GC U
  ||| | |||||||||||||||||||  ||||||| ||  
  CAC G AUAAGGUGGGGGACGUGUG  UUGGUCA CG G
CC   G U                   -G       A  A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

vvi-miR2950-5p      UUCCAUCUCUUGCACACUGGA
atr-miR2950         UUCCAUCUCUUGCACACUGGA
mes-miR2950         UUCCAUCUCUUGCACACUGGA
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