TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR1127b-3p

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

ACAAGUAUUUCUGGACGGAGG

miRBase

Precursor miRNA Sequence(5'-3')

CAUGACAGAUGCUUCUGUCCGGAAAUACUUGUCCUAGAAAUCGGUGUAUCUAGACUUAUUUUAAUUAUAGACACAUCCAUUUUAUCCAUUUAUAAGACAAGUAUUUCUGGACGGAGGGAGUAUUAUA

miRBase

Precursor miRNA Structure(5'-3') 

C    CAGA G                      C  ---------     C     A    GACUUA 
 AUGA    U CUUCUGUCCGGAAAUACUUGUC UA         GAAAU GGUGU UCUA      U
 ||||    | |||||||||||||||||||||| ||         ||||| ||||| ||||      U
 UAUU    A GGAGGCAGGUCUUUAUGAACAG AU         UUUUA CUACA AGAU      A
A    -AUG G                      A  AUUUACCUA     C     C    AUUAAU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

hvu-miR5049c         AGACAAUUAUUUUGGGACGGAGG
hvu-miR5049d         -UACAAUUAUUUAGGAACGGAG-
tae-miR1127b-3p      --ACAAGUAUUUCUGGACGGAGG
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