TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

hvu-miR5049c

Organism

Hordeum vulgare

Species

Mature miRNA Sequence(5'-3')

AGACAAUUAUUUUGGGACGGAGG

miRBase

Precursor miRNA Sequence(5'-3')

GUUUCUACUUCCCCUGUUCCAAAAUAAAUGUCUCAACCUUGUACUAGCUCUAGUAUAAAAUUGUACUAAGCCUCUAGACAAUUAUUUUGGGACGGAGGAAGUAUUAUU

miRBase

Precursor miRNA Structure(5'-3') 

GUUUC       C              A     ------------   CC        G 
     UACUUCC CUGUUCCAAAAUAA UGUCU            CAA  UUGUACUA C
     ||||||| |||||||||||||| |||||            |||  ||||||||  
     AUGAAGG GGCAGGGUUUUAUU ACAGA            GUU  AAUAUGAU U
UUAUU       A              A     UCUCCGAAUCAU   AA        C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

hvu-miR5049c         AGACAAUUAUUUUGGGACGGAGG
hvu-miR5049d         -UACAAUUAUUUAGGAACGGAG-
tae-miR1127b-3p      --ACAAGUAUUUCUGGACGGAGG
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