TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

hvu-miR5049d

Organism

Hordeum vulgare

Species

Mature miRNA Sequence(5'-3')

UACAAUUAUUUAGGAACGGAG

miRBase

Precursor miRNA Sequence(5'-3')

AUUCUACUUCCUCUGUACCAAAAUAAUUGCAGUUGGAGAGAAAUAGACUAGUAUUUCUCCCCAACUACAAUUAUUUAGGAACGGAGGGAGAAUUUU

miRBase

Precursor miRNA Structure(5'-3') 

AUUCUA          A  A         C      A        GA 
      CUUCCUCUGU CC AAAUAAUUG AGUUGG GAGAAAUA  C
      |||||||||| || ||||||||| |||||| ||||||||   
      GAGGGAGGCA GG UUUAUUAAC UCAACC CUCUUUAU  G
UUUUAA          A  A         A      C        GA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

hvu-miR5049c         AGACAAUUAUUUUGGGACGGAGG
hvu-miR5049d         -UACAAUUAUUUAGGAACGGAG-
tae-miR1127b-3p      --ACAAGUAUUUCUGGACGGAGG
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