TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR827-3p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

UUAGAUGAACAUCAACAAACA

miRBase

Precursor miRNA Sequence(5'-3')

UUUGUUGAUGGUCAUCUAUUCAUCAUAUCAUUUGGCAUAGUUUUUGCAACCAUUAAUAUGCCAUGAUUAGAUGAACAUCAACAAACA

miRBase

Precursor miRNA Structure(5'-3') 

--          G       U   UCAUAUCAUU       G  UU  C 
  UUUGUUGAUG UCAUCUA UCA          UGGCAUA UU  UG A
  |||||||||| ||||||| |||          ||||||| ||  ||  
  AAACAACUAC AGUAGAU AGU          ACCGUAU AA  AC C
AC          A       U   ----------       -  UU  C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

cru-miR827                   UUAGAUGACCAUCAACAAACG
esa-miR827                   UUAGAUGACCAUCAACAAACG
aly-miR827-3p                UUAGAUGACCAUCAACAAACG
ath-miR827                   UUAGAUGACCAUCAACAAACU
tcc-miR827                   UUAGAUGACCAUCAACAAACA
fve-miR827                   UUAGAUGACCAUCAACAAACA
csi-miR827                   UUAGAUGACCAUCAACAAACA
bra-miR827                   UUAGAUGACCAUCAACAAAUA
ppe-miR827                   UUAGAUGACCAUCAACAAACA
mes-miR827                   UUAGAUGACCAUCAACAAACA
stu-miR827-3p                UUAGAUGAACAUCAACAAACA
sly-miR827                   UUAGAUGAACAUCAACAAACA
mac-miR827                   UUAGAUGACCAUCAGCAAACA
pvi-miR827                   UUAGAUGACCAUCAGCAAACA
osa-miR827                   UUAGAUGACCAUCAGCAAACA
zma-miR827-3p                UUAGAUGACCAUCAGCAAACA
bdi-miR827-3p                UUAGAUGACCAUCAGCAAACA
dca-miR827-b2.0r1-20623      UUAGAUGAUCAUCAGCAAACA
                             ******** ***** ****