TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR827-3p

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

UUAGAUGACCAUCAGCAAACA

miRBase

Precursor miRNA Sequence(5'-3')

AUUGAGCCGAUUCAUGCAGCUCUGAACUUGUUUUGUUGGUUGUCAUCUAACCAUCGAUCGGUCCGUGCUUCGGUGCUUGUGCCAUGAUUUUGCAUCAUCACACCGGCGAUGGUUAGAUGACCAUCAGCAAACAUGUUCGUGAGACAUGCCGUGCGUCCUGAGCU

miRBase

Precursor miRNA Structure(5'-3') 

AUUG   - --   U    -  - -   -     U     U      U               A     CC   CUUC     UUGUGC 
    AGC C  GAU CAUG CA G CUC UGAAC UGUUU GUUGGU GUCAUCUAACCAUCG UCGGU  GUG    GGUGC      C
    ||| |  ||| |||| || | ||| ||||| ||||| |||||| ||||||||||||||| |||||  |||    |||||      A
    UCG G  CUG GUGC GU C GAG GCUUG ACAAA CGACUA CAGUAGAUUGGUAGC GGCCA  CAC    CUACG      A
----   A UC   C    C  A A   U     U     -      C               -     --   --UA     UUUUAG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

cru-miR827                   UUAGAUGACCAUCAACAAACG
esa-miR827                   UUAGAUGACCAUCAACAAACG
aly-miR827-3p                UUAGAUGACCAUCAACAAACG
ath-miR827                   UUAGAUGACCAUCAACAAACU
tcc-miR827                   UUAGAUGACCAUCAACAAACA
fve-miR827                   UUAGAUGACCAUCAACAAACA
csi-miR827                   UUAGAUGACCAUCAACAAACA
bra-miR827                   UUAGAUGACCAUCAACAAAUA
ppe-miR827                   UUAGAUGACCAUCAACAAACA
mes-miR827                   UUAGAUGACCAUCAACAAACA
stu-miR827-3p                UUAGAUGAACAUCAACAAACA
sly-miR827                   UUAGAUGAACAUCAACAAACA
mac-miR827                   UUAGAUGACCAUCAGCAAACA
pvi-miR827                   UUAGAUGACCAUCAGCAAACA
osa-miR827                   UUAGAUGACCAUCAGCAAACA
zma-miR827-3p                UUAGAUGACCAUCAGCAAACA
bdi-miR827-3p                UUAGAUGACCAUCAGCAAACA
dca-miR827-b2.0r1-20623      UUAGAUGAUCAUCAGCAAACA
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