TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mac-miR827

Organism

Musa acuminata

Species

Mature miRNA Sequence(5'-3')

UUAGAUGACCAUCAGCAAACA

PmiREN

Precursor miRNA Sequence(5'-3')

AAATTGCAGCTTTGAATCTGTTTTGTTGATGGTCATCTAATCATTTCCAAATTCCTCCCTGTCTTGTTGAGTGAGGCCATGATTAGATGACCATCAGCAAACAAGTTCACAAGACATGCACAT

PmiREN

Precursor miRNA Structure(5'-3') 

AAAU    - -   -     C     U                    UU  AA    CU CCU 
    UGCA G CUU UGAAU UGUUU GUUGAUGGUCAUCUAAUCAU  CC  AUUC  C   G
    |||| | ||| ||||| ||||| ||||||||||||||||||||  ||  ||||  |    
    ACGU C GAA ACUUG ACAAA CGACUACCAGUAGAUUAGUA  GG  UGAG  G   U
-UAC    A A   C     A     -                    CC  AG    UU UUC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

cru-miR827                   UUAGAUGACCAUCAACAAACG
esa-miR827                   UUAGAUGACCAUCAACAAACG
aly-miR827-3p                UUAGAUGACCAUCAACAAACG
ath-miR827                   UUAGAUGACCAUCAACAAACU
tcc-miR827                   UUAGAUGACCAUCAACAAACA
fve-miR827                   UUAGAUGACCAUCAACAAACA
csi-miR827                   UUAGAUGACCAUCAACAAACA
bra-miR827                   UUAGAUGACCAUCAACAAAUA
ppe-miR827                   UUAGAUGACCAUCAACAAACA
mes-miR827                   UUAGAUGACCAUCAACAAACA
stu-miR827-3p                UUAGAUGAACAUCAACAAACA
sly-miR827                   UUAGAUGAACAUCAACAAACA
mac-miR827                   UUAGAUGACCAUCAGCAAACA
pvi-miR827                   UUAGAUGACCAUCAGCAAACA
osa-miR827                   UUAGAUGACCAUCAGCAAACA
zma-miR827-3p                UUAGAUGACCAUCAGCAAACA
bdi-miR827-3p                UUAGAUGACCAUCAGCAAACA
dca-miR827-b2.0r1-20623      UUAGAUGAUCAUCAGCAAACA
                             ******** ***** ****