TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR8015-5p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

UAUUGGAUAUUGAAAAUGAAACUU

miRBase

Precursor miRNA Sequence(5'-3')

UAUUGGAUAUUGAAAAUGAAACUUUAGUUAUCGAGAUAUUCAAACUAAAGUUUCAUUUUCAAGGUCCAAUAGC

miRBase

Precursor miRNA Structure(5'-3') 

--        A                    AUC  G 
  UAUUGGAU UUGAAAAUGAAACUUUAGUU   GA A
  |||||||| ||||||||||||||||||||   || U
  AUAACCUG AACUUUUACUUUGAAAUCAA   CU U
CG        G                    --A  U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR10186k       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186l       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186j       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186i       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186h       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186g       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186f       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186d       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186c       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186b       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186e       --UUGGGAAUUAAAAUGUAAACUU
gma-miR10186a       --UUGGGAAUUAAAAUGUAAACUU
stu-miR8015-5p      UAUUGGAUAUUGAAAAUGAAACUU
stu-miR8015-3p      GUUUCAUUUUCAAGGUCCAAUAGC
                      **     *  *     **