TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR10186b

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UUUUGGGAAUUAAAAUGUAAACUU

miRBase

Precursor miRNA Sequence(5'-3')

UUAAUCUUUGAAGUUUAUAUUUUAAUUUUCAAAAGGUCCUUGCUGUUAAAAUUCAUUAACUAACGAAGUUAAAAAAUUUAACGGAAGAAACCUUUUGGGAAUUAAAAUGUAAACUUCAGAGACUUU

miRBase

Precursor miRNA Structure(5'-3') 

UUAA                                 -C   G        A  CA      A 
    UCUUUGAAGUUUAUAUUUUAAUUUUCAAAAGGU  CUU CUGUUAAA UU  UUAACU A
    |||||||||||||||||||||||||||||||||  ||| |||||||| ||  |||||| C
    AGAGACUUCAAAUGUAAAAUUAAGGGUUUUCCA  GAA GGCAAUUU AA  AAUUGA A
UUUC                                 AA   -        -  AA      A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR10186k       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186l       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186j       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186i       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186h       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186g       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186f       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186d       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186c       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186b       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186e       --UUGGGAAUUAAAAUGUAAACUU
gma-miR10186a       --UUGGGAAUUAAAAUGUAAACUU
stu-miR8015-5p      UAUUGGAUAUUGAAAAUGAAACUU
stu-miR8015-3p      GUUUCAUUUUCAAGGUCCAAUAGC
                      **     *  *     **