TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR10186i

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UUUUGGGAAUUAAAAUGUAAACUU

miRBase

Precursor miRNA Sequence(5'-3')

UUUAGUUCAUAUAGUUAAUAAGUGAAUUUUUUAGUCCCUGAAAUUUAUAUUUUAAUUCCUAAAAGGUUCCUACAGUUAAAAUUCUUUAACUAACAGAGUUAAAAAAAAUUUAACGGCAGAAACUUUUUGGGAAUUAAAAUGUAAACUUCAUGAACUAA

miRBase

Precursor miRNA Structure(5'-3') 

UUUAGUUCAUAUAGUUAAUAAGUGAAUUUU     C C    A                         C  A A      -AUUC       A 
                              UUAGU C UGAA UUUAUAUUUUAAUUCCUAAAAGGUU CU C GUUAAA     UUUAACU A
                              ||||| | |||| ||||||||||||||||||||||||| || | ||||||     ||||||| C
                              AAUCA G ACUU AAAUGUAAAAUUAAGGGUUUUUCAA GA G CAAUUU     AAAUUGA A
------------------------------     A U    C                         A  C G      AAAAA       G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR10186k       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186l       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186j       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186i       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186h       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186g       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186f       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186d       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186c       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186b       UUUUGGGAAUUAAAAUGUAAACUU
gma-miR10186e       --UUGGGAAUUAAAAUGUAAACUU
gma-miR10186a       --UUGGGAAUUAAAAUGUAAACUU
stu-miR8015-5p      UAUUGGAUAUUGAAAAUGAAACUU
stu-miR8015-3p      GUUUCAUUUUCAAGGUCCAAUAGC
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