TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR482d-3p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

UCUUGCCUACACCGCCCAUGCC

miRBase

Precursor miRNA Sequence(5'-3')

AAUUUUUGGGAAGCUUUUGGCGUGAGUGGUGGGGUAAGAUAGAUCUAUCAUAUUUAUGAUAUGAAAAAUCUUGCCUACACCGCCCAUGCCCAUAUCUUCCAAUUAUUUCU

miRBase

Precursor miRNA Structure(5'-3') 

--AAUUUUUG     CUUUU      A      -         AGA  -      A 
          GGAAG     GGCGUG GUGGUG GGGUAAGAU   UC UAUCAU U
          |||||     |||||| |||||| |||||||||   || ||||||  
          CCUUC     CCGUAC CGCCAC UCCGUUCUA   AG AUAGUA A
UCUUUAUUAA     UAUAC      C      A         AAA  U      U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR482d-3p      UCUUGCCUACACCGCCCAUGCC
sly-miR482b         UCUUGCCUACACCGCCCAUGCC
mes-miR482e         UCUUACCUACACCGCCCAUGCC
mtr-miR482-3p       -CUUACCUACACCUCCCAUGCC
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