TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR482-3p

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

CUUACCUACACCUCCCAUGCC

miRBase

Precursor miRNA Sequence(5'-3')

GGGGAAGGCAUAGGCAUGGGAUAGUAGGGAAGAAGUGAUAACAGCAUAUGCUUAUUAUGGUGCUUCUUCUUACCUACACCUCCCAUGCCUACGUUUUCCCUCUA

miRBase

Precursor miRNA Structure(5'-3') 

---         A           -UA     ---        --G    -C   A 
   GGGGAAGGC UAGGCAUGGGA   GUAGG   GAAGAAGU   AUAA  AGC U
   ||||||||| |||||||||||   |||||   ||||||||   ||||  |||  
   UCCCUUUUG AUCCGUACCCU   CAUCC   CUUCUUCG   UAUU  UCG G
AUC         C           CCA     AUU        UGG    AU   U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR482d-3p      UCUUGCCUACACCGCCCAUGCC
sly-miR482b         UCUUGCCUACACCGCCCAUGCC
mes-miR482e         UCUUACCUACACCGCCCAUGCC
mtr-miR482-3p       -CUUACCUACACCUCCCAUGCC
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