TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mes-miR482e

Organism

Manihot esculenta

Species

Mature miRNA Sequence(5'-3')

UCUUACCUACACCGCCCAUGCC

miRBase

Precursor miRNA Sequence(5'-3')

AGUUAGGAUUUUCAGAAGGUUGCGGGAUGGGUGGGUGGGUGAGAUGACCAAUUAAUGGAUCUCAAUUGAUUGUGUUCAUCUUACCUACACCGCCCAUGCCUUGGGUUUCCGAUUAUUCCUCCCUC

miRBase

Precursor miRNA Structure(5'-3') 

-  UU    -UUU  A    G   C  G        -             - -        GGA 
 AG  AGGA    UC GAAG UUG GG AUGGGUGG GUGGGUGAGAUGA C CAAUUAAU   U
 ||  ||||    || |||| ||| || |||||||| ||||||||||||| | ||||||||    
 UC  UCCU    AG CUUU GGU CC UACCCGCC CAUCCAUUCUACU G GUUAGUUA   C
C  CC    UAUU  C    G   U  G        A             U U        ACU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR482d-3p      UCUUGCCUACACCGCCCAUGCC
sly-miR482b         UCUUGCCUACACCGCCCAUGCC
mes-miR482e         UCUUACCUACACCGCCCAUGCC
mtr-miR482-3p       -CUUACCUACACCUCCCAUGCC
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